Coexpression analysis provides an expression profile similar search against the gene selected by user. At first, conditional dataset and gene ID are selected. Then the expression profile are show in the line graph (10 records in a figure). Otherwise, gene information is listed under the figure.

Here, AlgaePath uses Pearson correlation coefficient (PCC) and Spearman's rank correlation coefficient based on Variance-Stabilizing Transformation (VST) normalization to generate correlation results.

 
  Selected gene ID: Cre01.g002500.t1.2

  
  1. Spearman's rank correlation coefficient (Spearman's rho)  
     
Condition dataset selection:
 
All conditions
Nitrogen starvation
Fe depletion with TAP or minimal media

 
     
     
     
     
  2. Pearson correlation coefficient (PCC)  
     
  Condition dataset selection:  
 
All conditions
 Nitrogen starvation
Trace element
CO2 concentration
Hydrogen peroxide stress
Fe depletion with TAP or minimal media